Cell Imaging Using Picosecond Ultrasonics
This project aims to develop an instrument for imaging cells using their mechanical properties as a contrast mechanism and with high resolution. The goal is to design and build a microscopy system that can be used as a general microscopy tool for cell biologists.
To map the elasticity of cells with optical or higher resolution is very challenging. Ultrasound is a way to image with contrast derived from elasticity however, to obtain high resolution imaging this way necessitates phonons (GHz frequency ultrasound [link to Bordeaux]). To work at this regime poses many challenges: phonon generation requires laser light and heat which can damage cells, at GHz frequencies the phonons do not travel very far and the pump-probe detection method is typically low in signal-to-noise ratio and slow in acquisition speed.
If all those challenges are solved, then there can be potentially greater benefits: the energy carried by phonons is orders of magnitude lower than that of light, which is suitable for live-cell imaging and allows to use arbitrarily small wavelengths for imaging leading to super-resolution. The contrast mechanism does not require the use of dyes so its label-free and of course it will provide means to image cells based on elasticity at a resolution never achieved before.
Detection mechanism - Brillouin scattering in transmission
To detect the phonon field the scattered light interferes with the directly propagating light at the detector leading to an oscillating signal. These oscillations are termed Brillouin Oscillations and the Brillouin frequency f_B of the oscillation is given by the simple equation: f_B = 2*Va*n/λ
Which related the acoustic velocity Va with the probe wavelength λ and the refractive index n.
The cells are grown on a transducer substrate similar to those described here. The optimization of the transducer layer is different in this case. Here we are much more concerned with optimizing the optical properties of the transducers. The goal is to reduce the amount of blue light reaching the cell and either maximize the reflected or transmitted light for the probe beam. We still have to ensure that the acoustic performance of the transducer is ok and that the acoustic bandwidth is sufficient to generate waves in the Brillouin frequency range of the sample.
Measurements are made using a pump/probe picosecond laser ultrasound instrument utilizing ASOPS lasers. These laser control the delay between the pulse electronically removing the need to mechanically scan a delay line. This allows the very small signals present in these typos of experiments to be obtained quickly.
The pump beam is frequency doubled using a nonlinear crystal to give a wavelength of 390nm, the probe beam is at 780nm and both beams can be directed to the sample through and objective lens normal to the sample. optionally the pump beam can also be directed to the underside of the sample to generate the acoustic waves from below.
The instrument also has optical paths for wide field phase contrast imaging to allow the cells being studied to be visualized. This allows us to assess the cells health and locate the scan region of most interest.
The acoustic signals are captured by recording the probe beam power with a photo-diode, this signal is then filtered and amplified before being digitized with a digital oscilloscope. To build up an image the sample is raster scanned.
Ultrasonic imaging of cells
An example trace is shown below, there are three main components present in the signal. A signal from the transducer substrate, one from Brillouin oscillations in the glass, and one from the cell or media. These signals are all clearly separated in the the frequency domain as shown by the FFT.
By recording the Brillouin frequency while scanning the sample images can be taken. The below shows a Brillouin frequency map of a fixed fibroblast cell, this image shows the location of the nucleus (the redder region).
A different fibroblast cell is shown below, here we can see much more detail, with the filopodia clearly visible.
The image below shows a scan of a fixed cardiac cell, the striations of the cell are clearly visible, these repeating structures are how the cells contract, and have spacings on the order of a few microns.
Measuring live cells is much more challenging, this is because the amount of light they can tolerate without being affected is much lower than the amount that would damage fixed cells. Secondly the cells can move around and so the scans need to be taken as quickly as possible.
It is possible to use signal processing techniques to extract more information from the data we obtain during the scans. By analyzing the frequency of the signal vs time we can extract changes in frequency with depth. This enables the mapping of internal structures in the cells, or should the acoustic waves leave the cell and enter the medium it allows us to obtain the profile.
There are a number of different ways to do this, from relatively fast and simple methods (zero cross analysis) to more complex approaches (wavelets).
Below is an example of the process for a phantom cell made from polystyrene beads. In the time trace the transition from the phantom back to the media is clearly visible.
If we take the Brillouin frequency map and a map of the refractive index we can produce a map of the acoustic velocity of the material.
Combining this map with the transition time information gives us the profile of the cell phantom.
Related Publications and Talks
Pérez-Cota Fernando, Smith Richard J., Moradi Emilia, Marques Leonel, Webb Kevin F., Clark Matt - Thin-film optoacoustic transducers for subcellular Brillouin oscillation imaging of individual biological cells
- Applied Optics 54(28):8388, oct 2015
BibtexAuthor : Pérez-Cota Fernando, Smith Richard J., Moradi Emilia, Marques Leonel, Webb Kevin F., Clark Matt
Title : Thin-film optoacoustic transducers for subcellular Brillouin oscillation imaging of individual biological cells
In : Applied Optics -
Date : oct 2015
Smith Richard J., Cota Fernando Perez, Marques Leonel, Chen Xuesheng, Arca Ahmet, Webb Kevin, Aylott Jonathon, Somekh Micheal G., Clark Matt - Optically excited nanoscale ultrasonic transducers
- The Journal of the Acoustical Society of America 137:219--227, jan 2015
Bibtex<div>Author : Smith Richard J., Cota Fernando Perez, Marques Leonel, Chen Xuesheng, Arca Ahmet, Webb Kevin, Aylott Jonathon, Somekh Micheal G., Clark Matt
Title : Optically excited nanoscale ultrasonic transducers
In : The Journal of the Acoustical Society of America -
Date : jan 2015
Richard Smith, Fernando Perez, LeonelMarques, Matt Clark,Design and application of nano-scaled transducers,Institute of Physics Optics + Ultrasound One Day Meeting, May 2013, Nottingham, UK
Fernando Perez Cota, M. Clark, K. F. Webb, and R.J. Smith, Nanoscale transducers for picosecond laser ultrasonics in cells,3rd symposium of laser ultrasonics, June 2013, Yokohamma, Japan,